PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2906_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 170aa    MW: 18929.6 Da    PI: 10.5466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2906_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192171256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta++Aa+a++aa+++++g+
  RrC2906_p1 21 RYRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAQQAARAYDAAAREFRGA 71
                59*******.**********843...6*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-222180IPR016177DNA-binding domain
CDDcd000181.57E-192180No hitNo description
PROSITE profilePS5103224.3422178IPR001471AP2/ERF domain
PfamPF008479.6E-142170IPR001471AP2/ERF domain
SMARTSM003801.4E-362184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-322179IPR001471AP2/ERF domain
PRINTSPR003673.1E-112233IPR001471AP2/ERF domain
PRINTSPR003673.1E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTKMGLKPDP NPIQSNAKEI RYRGVRKRPW GRYAAEIRDP RKKTRVWLGT FDTAQQAARA  60
YDAAAREFRG AKAKTNFPTS LELKANYGGY SRSPSQSSTV DSASPTAARL VTPPQLELSL  120
GNGGACYQIP VARPVYFFNM TAFPLAATCG VELGRRLSQY EIWGGFYIWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-201788169ATERF1
2gcc_A9e-201788169ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4997161e-107AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107000.18e-89PREDICTED: ethylene-responsive transcription factor 8
SwissprotO803407e-64ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLM4EQ869e-89M4EQ86_BRARP; Uncharacterized protein
STRINGBra030957.1-P3e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-55ethylene responsive element binding factor 4